Reading a sequence | Viewing sequence metadata | Selecting and annotating chromatograms | Working with a single chromatogram | Working with nested samples | Reading peak tables from a sequence | See also
Package: chromConverter 0.11.2.9000
chromConverter: Chromatographic File Converter
Reads chromatograms from binary formats into R objects. Currently supports conversion of 'Agilent ChemStation', 'Agilent MassHunter', 'Agilent OpenLab', 'Shimadzu LabSolutions', 'ThermoRaw', 'Varian Workstation', and 'Waters Empower' files as well as various other formats. In addition to its internal parsers, chromConverter contains bindings to parsers in external libraries, such as 'Aston' <https://github.com/bovee/aston>, 'Entab' <https://github.com/bovee/entab>, 'rainbow' <https://rainbow-api.readthedocs.io/>, and 'ThermoRawFileParser' <https://github.com/compomics/ThermoRawFileParser>. The suggested packages 'entab' and 'chromConverterExtraTests' are not on CRAN: both are available from the repository given in 'Additional_repositories', and the latest test fixtures can also be installed from <https://github.com/ethanbass/chromConverterExtraTests>.
Authors:
chromConverter_0.11.2.9000.tar.gz
chromConverter_0.11.2.9000.zip(r-4.7-any)chromConverter_0.11.2.9000.zip(r-4.6-any)chromConverter_0.11.2.9000.zip(r-4.5-any)
chromConverter_0.11.2.9000.tgz(r-4.6-any)chromConverter_0.11.2.9000.tgz(r-4.5-any)
chromConverter_0.11.2.9000.tar.gz(r-4.7-any)chromConverter_0.11.2.9000.tar.gz(r-4.6-any)
chromConverter_0.11.2.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
chromConverter/json (API)
| # Install 'chromConverter' in R: |
| install.packages('chromConverter', repos = c('https://ethanbass.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ethanbass/chromconverter/issues
Pkgdown/docs site:https://ethanbass.github.io
cheminformaticschromatographyfair-datagc-fidhplchplc-dadhplc-uvmetabolomicsmetabolomics-dataopen-dataopen-science
Last updated from:cccce1b7ed. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 170 | ||
| source / vignettes | OK | 311 | ||
| linux-release | OK | 188 | ||
| macos-release | OK | 163 | ||
| macos-oldrel | OK | 129 | ||
| windows-devel | OK | 447 | ||
| windows-release | OK | 408 | ||
| windows-oldrel | OK | 209 | ||
| wasm-release | OK | 140 |
Exports:add_metadatacall_entabcall_openchromcall_rainbowconfigure_openchromconfigure_python_environmentextract_metadataget_elementread_acamlread_agilent_amxread_agilent_dread_agilent_dxread_agilent_rsltread_asmread_cdfread_chemstation_chread_chemstation_csvread_chemstation_logsread_chemstation_methodread_chemstation_msread_chemstation_reportsread_chemstation_uvread_chromatotecread_chromeleonread_chromsread_mdfread_metadataread_mzmlread_peaklistread_shimadzuread_shimadzu_gcdread_shimadzu_lcdread_shimadzu_methodread_shimadzu_qgdread_thermorawread_varian_peaklistread_varian_smsread_waters_arwread_waters_rawsp_converteruv_converterwrite_agilent_amxwrite_andi_chromwrite_andi_mswrite_chromswrite_mzml
Dependencies:base64encbitbit64bitopscellrangerclicpp11crayondata.tabledigestdplyrfsgenericsglueherehmsjsonlitelatticelifecyclemagrittrMatrixpillarpkgconfigpngprettyunitsprogresspurrrR6RaMSrappdirsRcppRcppTOMLreadxlrematchreticulaterlangrprojrootstringistringrtibbletidyrtidyselectutf8vctrswithrxml2
